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Friday, 19 July 2013

07:30 - 09:00
09:00 - 09:15
09:15 - 10:15

10:15 - 10:45
10:45 - 11:10
11:10 - 11:50

11:50 – 12:30

12:30 - 13:30
13:30 - 14:10

14:10 - 14:50

14:50 - 15:30

15:30 - 16:00
16:00 - 16:40

16:40 - 17:00

17:00 - 17:20


Keynote: Atul Butte. Translating a trillion points of data into therapies, diagnostics, and new insights into disease
Morning break
Djork-Arné Clevert. Setting the context – contest data set I
Martin Otava. Prediction of Gene Expression in Human Using Rat in Vivo Gene Expression in Japanese Toxicogenomics Project PDF
Hector A. Rueda-Zarate. A gene expression landscape of drug-induced liver hepatotoxicity PDF
Lunch break
Ashley Bonner. Detecting networks of gene expressions associated with human drug induced liver (DILI) concern using sparse principal components PDF
Tommi Suvitaival. Cross-organism prediction of drug hepatotoxicity by sparse group factor analysis PDF
Marinka Zitnik. Matrix Factorization-Based Data Fusion for Drug-Induced Liver Injury Prediction PDF
Afternoon break
Patricia Sebastián-Leon. Using probabilistic models of signaling pathways to predict in vivo drug activity PDF
Ryan Gill. Similarity in Network Structures for in vivo and in vitro Data from the Japanese Toxicogenomics Project PDF
Jose Luiz Rybarczyk-Filho. TRANSTAGING: Transcriptogram-based staging of cancer PDF
Conference dinner

Saturday, 20 July 2013

09:00 - 10:00

10:00 - 10:30
10:30 - 11:10
11:10 - 11:50

11:50 – 12:30

12:30 - 13:40
13:40 - 14:20

14:20 - 14:50
14:50 - 15:30

15:30 - 16:00
16:00 - 16:20
16:20 - 16:40

16:40 - 17:10
17:10 - 17:30

Keynote: Nikolaus Rajewsky. Circular RNAs and other surprises from analysis of RNA:protein interactions
Morning break
Wei Zhang. Assessing Genomic Biomarkers of Toxicity in Drug Development PDF
Naiyang Guan. Reasonably integrating data for predicting drug toxicity by machine learning PDF
Jari Björne. Analyzing the Japanese Toxicogenomics Project Dataset with SVM and RLS Classifiers PDF
Lunch break
Danyel Jennen. DILI classification model based on in vitro human transcriptomics and in vivo rat clinical chemistry data PDF
Sepp Hochreiter. Setting the context – contest data set II
Wenqian Zhang. Assessing single-nucleotide polymorphism and genotype calling using the KPGP-38 Human Genomes next-generation sequencing data from CAMDA
Afternoon break
Mathew Palakal. Characterization of the Korean Genome PDF
Abhishek Kumar. Application of next-generation genome and transcriptome based methods for the exploration of secondary metabolites from marine fungi for the treatment of cancer PDF
Short break: vote for best presentations
Closing address and CAMDA contest awards

The scientific program will include keynotes by leading researchers in the field and selected presentations of contest dataset analyses. The two-day meeting will also feature a poster session and opportunities for informal discussions during a social dinner. The conference will close on Saturday in time for delegates to join to the evening reception of ISMB ECCB.
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Conference dinner – Friday, 19 July 2013, 7:00 pm - 10:00 pm
The conference dinner will take place at Moorlake. The historical inn, situated at the Glienicker Schlosspark between Berlin and Potsdam, has existed for over 100 years. The beautiful beer garden at the water provides guests, besides a beautiful view on the River Havel, a kitchen with old-Berliner character and many seasonal specialties from the Mark Brandenburg.

Transportation to the dinner is included. The bus will leave after the last session and return from Moorlake at 10pm.


Atul Butte, MD, PhD
Atul Butte, MD, PhD
Stanford University School of Medicine

Nikolaus Rajewsky, PhD
Nikolaus Rajewsky, PhD
Max-Delbrück-Center for Molecular Medicine

Extended Abstract Proposals Due20 May 2013
Abstract Deadline for Poster Submission 25 May 2013
Notification of Accepted Contributions30 May 2013
Early Registration Closes7 Jun 2013
CAMDA2013 Conference19–20 Jul 2013
ISMB/ECCB 2013 Conference21–23 Jul 2013
Full Paper Submission Click to save the dates!25 Sep 2013



Landes Bioscience